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@theiagen

Theiagen Genomics

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  1. public_health_bioinformatics public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 33 16

  2. public_health_viral_genomics public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 38 17

  3. public_health_bacterial_genomics public_health_bacterial_genomics Public

    WDL 26 14

Repositories

Showing 10 of 28 repositories
  • tbp-parser Public

    A TBProfiler output parser. Please contact [email protected] or [email protected] with any questions.

    theiagen/tbp-parser’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Jul 18, 2024
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    theiagen/public_health_bioinformatics’s past year of commit activity
    WDL 33 GPL-3.0 16 64 7 Updated Jul 18, 2024
  • Western-WFD-2024 Public

    Resource for the Western Region WFD 2024 Training Event

    theiagen/Western-WFD-2024’s past year of commit activity
    Shell 0 GPL-3.0 2 0 10 Updated Jul 17, 2024
  • mercury Public

    Mercury prepares and formats metadata for submission to national & international genomic databases.

    theiagen/mercury’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 16, 2024
  • theiagen_docker_builds Public
    theiagen/theiagen_docker_builds’s past year of commit activity
    Dockerfile 1 0 1 0 Updated Jul 1, 2024
  • terra_utilities Public
    theiagen/terra_utilities’s past year of commit activity
    WDL 4 AGPL-3.0 1 2 2 Updated May 17, 2024
  • HMAS-wdl Public

    A WDL wrapper around HMAS-QC-Pipeline2 for Terra.bio

    theiagen/HMAS-wdl’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 30, 2024
  • utilities Public

    A collection of general utility scripts

    theiagen/utilities’s past year of commit activity
    Shell 1 AGPL-3.0 0 0 0 Updated Apr 23, 2024
  • VADR_models Public
    theiagen/VADR_models’s past year of commit activity
    Batchfile 0 GPL-3.0 0 1 0 Updated Mar 21, 2024
  • public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    theiagen/public_health_viral_genomics’s past year of commit activity
    WDL 38 AGPL-3.0 17 15 1 Updated Feb 20, 2024
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