address typo + clearer positivity/overlap defn #89
Workflow file for this run
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| name: booklet | |
| jobs: | |
| bookdown: | |
| name: build-bookdown | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| #- name: Setup upterm session | |
| #uses: lhotari/action-upterm@v1 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install tinyTeX | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt install -y curl libcurl4-doc libcurl4-openssl-dev libmagick++-dev libpoppler-cpp-dev texlive-extra-utils ghostscript | |
| - name: Install rmarkdown, bookdown and sysfonts | |
| run: Rscript -e 'install.packages(c("sysfonts","rmarkdown","bookdown"))' | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Restore R packages | |
| shell: Rscript {0} | |
| run: | | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv") | |
| renv::restore() | |
| - name: Cache bookdown results | |
| uses: actions/cache@v3 | |
| with: | |
| path: _bookdown_files | |
| key: bookdown-2-${{ hashFiles('**/*Rmd') }} | |
| restore-keys: bookdown-2- | |
| - name: Render book HTML | |
| run: | | |
| Rscript -e 'bookdown::clean_book(TRUE)' | |
| Rscript -e 'bookdown::render_book("index.Rmd", quiet = TRUE)' | |
| #- name: Render book PDF | |
| #run: | | |
| #Rscript -e 'bookdown::render_book("index.Rmd", "bookdown::pdf_book")' | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: _handbook | |
| path: _handbook/ | |
| # Need to first create an empty gh-pages branch | |
| # see https://pkgdown.r-lib.org/reference/deploy_site_github.html | |
| # and also add secrets for a GH_PAT and EMAIL to the repository | |
| # gh-action from https://github.com/Cecilapp/GitHub-Pages-deploy | |
| checkout-and-deploy: | |
| runs-on: ubuntu-latest | |
| needs: bookdown | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Download Artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| # Artifact name | |
| name: _handbook # optional | |
| # Destination path | |
| path: _handbook # optional | |
| - name: Abbreviate Git SHA | |
| run: echo "GITHUB_SHA_SHORT=$(git rev-parse --short $GITHUB_SHA)" >> $GITHUB_ENV | |
| - name: Deploy to GitHub Pages | |
| uses: Cecilapp/GitHub-Pages-deploy@v3 | |
| if: github.event_name != 'pull_request' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| email: ${{ secrets.EMAIL }} # must be a GitHub-verified email | |
| build_dir: _handbook/ # "_site/" by default | |
| commit_message: Update book via ${{ env.GITHUB_SHA_SHORT }} |