The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
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Updated
Jul 4, 2024 - Nextflow
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
CoMorMent-Containers
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction
Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp ([email protected]).
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
Software program for generating synthetic datasets for genotypes and phenotypes
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
Cross-Trait Penalized Regression using Summary Statistics
This repository contains the programming codes used in Genetic analysis of amyotrophic lateral sclerosis identifies contributing pathways and cell types https://advances.sciencemag.org/content/7/3/eabd9036
Variational Inference of Polygenic Risk Scores
quincunx: an R package to query, download and wrangle PGS Catalog data
quincunx: an R package to query, download and wrangle PGS Catalog data
single cell informed polygenic risk scoring in Parkinson's disease
Julia implementation of Ge et al's PRScs
Polygenic risk modeling with latent trait-related genetic components
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