polygenic-risk-scores
Here are 30 public repositories matching this topic...
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
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Jul 4, 2024 - Nextflow
Bayesian PRS methods model uncertainty in effect size estimates and shrink small effect sizes to mitigate spurious associations and biases from sample overlap. By using full posterior distributions rather than point estimates, they effectively account for estimation errors and reduce the impact of artificially inflated associations.
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Jun 27, 2024 - R
CoMorMent-Containers
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Jun 27, 2024 - R
(superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files
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Jun 25, 2024 - Python
GAUDI: a penalized regression based PRS method designed specifically for admixed individuals
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Jun 19, 2024 - R
Pipeline for PRS computation integrating diverse PRS algorithms into a unique Snakemake workflow.
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Jun 18, 2024 - R
Variational Inference of Polygenic Risk Scores
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Jun 11, 2024 - Python
single cell informed polygenic risk scoring in Parkinson's disease
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Jun 8, 2024 - R
Julia implementation of Ge et al's PRScs
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Mar 8, 2024 - Julia
INVESTIGATING THE ASSOCIATION BETWEEN POLYGENIC RISK SCORE OF ADIPOSE TISSUE FUNCTION AND CARDIOVASCULAR DISEASE
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Nov 14, 2023 - Stata
Machine Learning in Genomics and Healthcare (COMP 565) Project
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Aug 10, 2023 - Jupyter Notebook
Machine Learning in Genomics and Healthcare (COMP 565) Project
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Aug 10, 2023 - Jupyter Notebook
quincunx: an R package to query, download and wrangle PGS Catalog data
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Jul 4, 2023 - R
A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.
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Jun 7, 2023 - Shell
Software program for generating synthetic datasets for genotypes and phenotypes
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Jun 1, 2023 - Jupyter Notebook
quincunx: an R package to query, download and wrangle PGS Catalog data
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Aug 14, 2022 - R
Toolkit to aid generation of advanced Polygenic Risk Scores (PRS) including SNP-allele tagging and interaction models, especially in HLA. Developed and maintained by Seth Sharp ([email protected]).
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Feb 16, 2024 - Python
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