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Jun 25, 2024 - R
targeted-sequencing
Here are 18 public repositories matching this topic...
A Snakemake pipeline for copy number variant calling without normal tissue samples
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Jun 19, 2024 - Python
A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
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Jun 17, 2024 - Python
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate between ARTIC v3, ARTIC v4, ARTIC v4.1, VarSkip 1a, VarSkip 2, Midnight and VarSkip Long primer sets sequenced by Illumina or ONT.
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Feb 27, 2024 - Rust
🍃 🧬 🧹 Probe set cleaning (Melastomataceae)
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Feb 20, 2024 - Shell
This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.
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Jan 31, 2024 - R
Identification of gene-fusions, including EML4-ALK
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Oct 25, 2023 - R
MSKCC CMO Innovation Lab
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May 19, 2023 - Makefile
DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.
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Mar 5, 2023 - C
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
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Dec 27, 2022 - Python
Tools for analyzing UMIErrorCorrect output
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Nov 14, 2022 - R
Barcode Analyzer for metabarcoding experiments
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Jun 7, 2021 - Python
Targeted RNA-sequencing for the quantification of measurable residual disease in acute myeloid leukemia
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Feb 22, 2020 - Python
Create a normalized heatmap for targeted RNAseq count matrix using user-defined housekeeping gene normalization.
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Feb 6, 2020 - R
Targeted Amplicon Bisulfite Sequencing Analysis Tool
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May 8, 2019 - Perl
For simulations of targeted-sequencing experiments under a known species/gene tree distribution, extracts the reference sequences that be used for mapping.
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Apr 9, 2018 - Python
NGSphy: phylogenomic simulation of next-generation sequencing data
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Mar 9, 2018 - Python
Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)
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Sep 12, 2017 - HTML
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