VARsim-infer #105
Workflow file for this run
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| name: Python package CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| permissions: | |
| contents: write | |
| jobs: | |
| update-requirements: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install autopep8 | |
| run: python -m pip install autopep8 | |
| - name: Format code with autopep8 | |
| run: autopep8 --in-place --aggressive --aggressive --recursive mimic/ | |
| - name: Automatic requirements.txt for Python Project | |
| uses: ryan-rozario/[email protected] | |
| with: | |
| PROJECT_PATH: mimic/ | |
| REQUIREMENT_PATH: ./requirements.txt | |
| - name: Commit changes | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Action" | |
| git add . | |
| git commit -m "Update requirements.txt and format code" || true | |
| git push origin HEAD:${{ github.head_ref }} || true | |
| continue-on-error: true # In case there are no changes | |
| - name: Upload updated requirements.txt | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: requirements | |
| path: requirements.txt | |
| build: | |
| needs: update-requirements | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Download updated requirements.txt | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: requirements | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 mypy pytest | |
| if [ -f requirements.txt ]; then | |
| python -m pip install -r requirements.txt | |
| else | |
| echo "No requirements.txt found" | |
| exit 1 | |
| fi | |
| - name: Lint with flake8 | |
| run: | | |
| # Stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # You can also enforce a max line length if desired | |
| # flake8 . --count --max-line-length=127 --statistics | |
| - name: Type check with mypy | |
| run: mypy --ignore-missing-imports --check-untyped-defs . | |
| - name: Set PYTHONPATH (Unix) | |
| run: echo "PYTHONPATH=$PWD" >> $GITHUB_ENV | |
| if: runner.os != 'Windows' | |
| - name: Set PYTHONPATH (Windows) | |
| shell: cmd | |
| run: | | |
| setlocal enabledelayedexpansion | |
| echo PYTHONPATH=!CD! >> %GITHUB_ENV% | |
| if: runner.os == 'Windows' | |
| - name: Run tests | |
| run: pytest tests/ --disable-warnings |