Merge pull request #62 from ucl-cssb/create_bayes_mcmc_class #117
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| name: Python package CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| permissions: | |
| contents: write | |
| jobs: | |
| update-requirements: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| fetch-depth: 0 | |
| - name: Set up Git | |
| run: | | |
| if [ "${{ github.event_name }}" = "pull_request" ] | |
| then | |
| BRANCH_NAME=${{ github.head_ref }} | |
| else | |
| BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/}) | |
| fi | |
| git checkout $BRANCH_NAME | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install autopep8 | |
| run: python -m pip install autopep8 | |
| - name: Format code with autopep8 | |
| run: autopep8 --in-place --aggressive --aggressive --recursive mimic/ | |
| - name: Install pip-tools | |
| run: python -m pip install pip-tools | |
| - name: Compile requirements.txt | |
| run: pip-compile --output-file requirements.txt requirements.in | |
| - name: Commit changes | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Action" | |
| git add . | |
| git commit -m "Update requirements.txt and format code" || true | |
| git push origin HEAD | |
| continue-on-error: true # In case there are no changes | |
| - name: Upload updated requirements.txt | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: requirements | |
| path: requirements.txt | |
| build: | |
| needs: update-requirements | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Download updated requirements.txt | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: requirements | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 mypy pytest | |
| if [ -f requirements.txt ]; then | |
| python -m pip install -r requirements.txt | |
| else | |
| echo "No requirements.txt found" | |
| fi |