Merge pull request #64 from ucl-cssb/create_bayes_mcmc_class #121
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name: Python package CI | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
permissions: | |
contents: write | |
jobs: | |
update-requirements: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v2 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
fetch-depth: 0 | |
- name: Set up Git | |
run: | | |
if [ "${{ github.event_name }}" = "pull_request" ] | |
then | |
BRANCH_NAME=${{ github.head_ref }} | |
else | |
BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/}) | |
fi | |
git checkout $BRANCH_NAME | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: "3.10" | |
- name: Install autopep8 | |
run: python -m pip install autopep8 | |
- name: Format code with autopep8 | |
run: autopep8 --in-place --aggressive --aggressive --recursive mimic/ | |
- name: Install pip-tools | |
run: python -m pip install pip-tools | |
- name: Compile requirements.txt | |
run: pip-compile --output-file requirements.txt requirements.in | |
- name: Commit changes | |
run: | | |
git config --global user.email "[email protected]" | |
git config --global user.name "GitHub Action" | |
git add . | |
git commit -m "Update requirements.txt and format code" || true | |
git push origin HEAD | |
continue-on-error: true # In case there are no changes | |
- name: Upload updated requirements.txt | |
uses: actions/upload-artifact@v3 | |
with: | |
name: requirements | |
path: requirements.txt | |
build: | |
needs: update-requirements | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-latest, windows-latest] | |
python-version: ["3.10"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Download updated requirements.txt | |
uses: actions/download-artifact@v3 | |
with: | |
name: requirements | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Cache Python dependencies | |
uses: actions/cache@v2 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install dependencies | |
shell: bash | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install flake8 mypy pytest | |
if [ -f requirements.txt ]; then | |
python -m pip install -r requirements.txt | |
else | |
echo "No requirements.txt found" | |
fi |