Based on TroubleMiner by Medem et al
Jira: pip install jira
Peewee: pip install peewee
Pygraphviz: Follow the chosen answer here
PyMySql: pip install pymysql
(optional) For Windows, make sure MySql is properly configured:
Install perl (I used Strawberry Perl), then run mysql_secure_installation.pl found in mysql directory. Edit ~:\xampp\phpMyAdmin\config.inc.php and change password