A Machine Learning Case-Control Classifier for Schizophrenia Based on DNA Methylation in Blood

Jupyter notebooks for re-produce the analysis of SZ case-control DNA methylation data focusing on CoRSIVs.

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
AdditionalCovariatesAberdeen.csv		AdditionalCovariatesAberdeen.csv
AdditionalCovariatesUCL.csv		AdditionalCovariatesUCL.csv
CoRSIV_ESS_SIV_CG_sites_clusters_hg38.csv		CoRSIV_ESS_SIV_CG_sites_clusters_hg38.csv
E-GEOD-80417.sdrf.txt		E-GEOD-80417.sdrf.txt
E-GEOD-84727.sdrf.txt		E-GEOD-84727.sdrf.txt
LICENSE		LICENSE
Notebook 2 Most informative variables in HM450K training dataset.ipynb		Notebook 2 Most informative variables in HM450K training dataset.ipynb
Notebook1 Exploratory analysis of blood-brain correlation in CoRSIVs.ipynb		Notebook1 Exploratory analysis of blood-brain correlation in CoRSIVs.ipynb
Notebook3 Machine Learning Model Building Pipeline.ipynb		Notebook3 Machine Learning Model Building Pipeline.ipynb
Notebook4 Association between Risk Distance and antipsychotic use.ipynb		Notebook4 Association between Risk Distance and antipsychotic use.ipynb
README.md		README.md
Top_98_2_range_probes.csv		Top_98_2_range_probes.csv
functions.R		functions.R
model_corsiv.csv		model_corsiv.csv
model_range.csv		model_range.csv

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