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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 18

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 5 4

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 7

Repositories

Showing 10 of 78 repositories
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 6 2 2 Updated Jul 2, 2024
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 5 2 1 Updated Jul 1, 2024
  • npg_notifications Public
    wtsi-npg/npg_notifications’s past year of commit activity
    0 1 0 1 Updated Jun 28, 2024
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    wtsi-npg/valet’s past year of commit activity
    Go 2 GPL-3.0 4 4 1 Updated Jun 28, 2024
  • npg_porch_cli Public

    A command-line client to enable communication with the npg_porch API.

    wtsi-npg/npg_porch_cli’s past year of commit activity
    Python 0 1 0 0 Updated Jun 28, 2024
  • extendo Public

    An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)

    wtsi-npg/extendo’s past year of commit activity
    Go 0 GPL-3.0 2 0 0 Updated Jun 28, 2024
  • npg_porch Public
    wtsi-npg/npg_porch’s past year of commit activity
    Python 2 GPL-3.0 3 9 0 Updated Jun 27, 2024
  • baton Public

    iRODS client programs and API

    wtsi-npg/baton’s past year of commit activity
    C 19 GPL-2.0 19 15 0 Updated Jun 25, 2024
  • build-irods-client-action Public

    GitHub Action providing a custom Docker container in which to build iRODS clients

    wtsi-npg/build-irods-client-action’s past year of commit activity
    Dockerfile 0 GPL-3.0 0 0 0 Updated Jun 24, 2024
  • npg_qc Public

    QC checks and metrics for Illumina NGS data

    wtsi-npg/npg_qc’s past year of commit activity
    Perl 5 17 20 0 Updated Jun 24, 2024
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