update base images

.github/workflows/integration-test.yml

@@ -0,0 +1,61 @@
+---
+name: Integration Test
+
+on:
+  pull_request:
+    branches:
+      - develop
+    paths:
+      - '.github/workflows/integration-test.yml'
+      - 'docker/**'
+
+  push:
+    branches:
+      - develop
+    paths:
+      - '.github/workflows/integration-test.yml'
+      - 'docker/**'
+
+  release:
+    types: [published]
+
+permissions:
+  id-token: write
+  contents: read
+
+jobs:
+  integration-test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: git checkout dea-sandbox
+        uses: actions/checkout@v3
+        with:
+          path: dea-sandbox
+
+      - name: git checkout dea-notebooks
+        uses: actions/checkout@v3
+        with:
+          repository: GeoscienceAustralia/dea-notebooks
+          path: dea-notebooks
+          ref: stable
+
+      - name: Configure AWS credentials
+        uses: aws-actions/configure-aws-credentials@v1
+        with:
+          role-to-assume: arn:aws:iam::538673716275:role/github-actions-role-readonly
+          aws-region: ap-southeast-2
+
+      - name: Copy tide modelling files with the AWS CLI
+        run: aws s3 sync s3://dea-non-public-data/tide_models/tide_models tide_models
+
+      - name: Start docker-compose
+        run: |
+          sudo chown -R 1000:100 ./dea-notebooks
+          cd ./dea-sandbox/integration-testing
+          CURRENT_UID=1000:100 docker-compose up -d
+
+      - name: Set up Datacube and Test
+        run: |
+          cd ./dea-sandbox/integration-testing
+          docker-compose exec -T sandbox ./dea-notebooks/Tests/setup_test_datacube.sh
+          docker-compose exec -T sandbox ./dea-notebooks/Tests/test_notebooks.sh

docker/Dockerfile

@@ -1,4 +1,4 @@
-FROM mambaorg/micromamba:git-7545124-jammy as sandbox-conda
+FROM mambaorg/micromamba:git-e4f55ab-jammy as sandbox-conda
 
 USER root
 COPY env.yaml /conf/
@@ -16,7 +16,7 @@ ENV CC=/env/bin/x86_64-conda_cos6-linux-gnu-gcc \
 RUN micromamba run -p /env pip install --no-cache-dir \
     --no-build-isolation -r /conf/requirements.txt
 
-FROM ubuntu:jammy-20220815
+FROM ubuntu:jammy-20230816
 
 ARG nb_user=jovyan
 ARG nb_uid=1000

docker/env.yaml

@@ -76,7 +76,7 @@ dependencies:
   - itsdangerous
   - Jinja2
   - jmespath
-  - jsonschema
+  - jsonschema<4.18
   - kiwisolver
   - lark
   - python-lmdb
@@ -99,6 +99,7 @@ dependencies:
   - partd
   - Pillow
   - PIMS
+  - poetry
   - psutil
   - psycopg2
   - pyasn1
@@ -240,7 +241,6 @@ dependencies:
   - prompt-toolkit # because of line_profiler/ipython
   - nbconvert # because of jupyter_contrib_nbextensions
   - nbformat
-  - nbval
   - sidecar
   - yapf
   - jedi

docker/requirements.txt

@@ -1,4 +1,5 @@
 cognitojwt
+nbval
 cgal
 line-profiler
 jupyterlab-logout