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@Mangul-Lab-USC

Mangul Lab at USC

The laboratory of Serghei Mangul at USC

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  1. benchmarking_SV benchmarking_SV Public

    Updated figures for "A benchmarking of WGS-based structural variant callers" paper

    Jupyter Notebook 24 7

  2. benchmarking_error_correction benchmarking_error_correction Public

    This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequencing".

    Jupyter Notebook 13 7

  3. imrep imrep Public

    Forked from mandricigor/imrep

    ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

    C 11 4

  4. pyTCR pyTCR Public

    Jupyter Notebook 11 3

  5. TAIR TAIR Public

    The Atlas of Immunoglobulin Repertoires (TheAIR)

    Jupyter Notebook 7 1

  6. db.microbiome db.microbiome Public

    Jupyter Notebook 7 2

Repositories

Showing 10 of 85 repositories
  • Mangul-Lab-USC.github.io Public

    Website for Mangul Lab.

    Mangul-Lab-USC/Mangul-Lab-USC.github.io’s past year of commit activity
    Jupyter Notebook 7 7 0 0 Updated Jul 6, 2024
  • reTCR Public

    TCR repertoire analysis in R

    Mangul-Lab-USC/reTCR’s past year of commit activity
    R 0 1 0 0 Updated Jun 18, 2024
  • Mangul-Lab-USC/code-availability’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 31, 2024
  • VISTA Public
    Mangul-Lab-USC/VISTA’s past year of commit activity
    Python 0 1 0 1 Updated May 15, 2024
  • Mangul-Lab-USC/VISTA_paper’s past year of commit activity
    Python 0 0 0 0 Updated Apr 25, 2024
  • imrep Public Forked from mandricigor/imrep

    ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

    Mangul-Lab-USC/imrep’s past year of commit activity
    C 11 14 0 0 Updated Apr 11, 2024
  • Mangul-Lab-USC/PharmBioinfo’s past year of commit activity
    C 0 0 0 0 Updated Jan 6, 2024
  • Mangul-Lab-USC/BioLLMBench’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 20, 2023
  • Mangul-Lab-USC/metadata-completeness’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Dec 18, 2023
  • Mangul-Lab-USC/CXPT-501-Fall_23’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 1, 2023

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