VISTA is an integrated SV calling framework that leverages results of individual callers using a novel and robust filtering and merging algorithm.
Figure folder includes all the multipanel figures in pdf/png format
data folder includes instructions on how to download bam/fasta files used to compute VISTA. Additionally it includes google drive link to the HPRC data set, and gold standard VCF files
results includes all the individual caller VCF files, VISTA VCFs for each human and mouse, and the CSV files that has all the numbers for the figures
scripts folder includes all the scripts(.py, .sh) used to run the merging, comparison, analysis, and data visualization
Sections Include:
- 7MM
- GIAB-D
- HPRC
- 7MM-C
- GIAB-I
- figure_scripts
- convert_scripts
- Command Lines