pgsc_calc v2.0.0-alpha.5

Changelog

Improvements

• Automatically mount directories inside singularity containers without setting any configuration
• Improve permanent caching of ancestry processes with --genotypes_cache parameter
• resync with nf-core framework
• Refactor combine_scorefiles to improve speed and quality control processes

Bug fixes

• Fix semantic storeDir definitions causing problems cloud execution (google batch)
• Fix missing DENOM values with multiple custom scoring files (score calculation not affected)
• Fix liftover failing silently with custom scoring files (thanks Brooke!)

Misc:

• Move aggregation step out of report
• Improve speed of ANCESTRY_ANALYSIS