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@nebfield nebfield released this 01 Aug 16:13
· 53 commits to main since this release
v0.4.0
d390a0a
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Learn about vigilant mode.

Changelog

New features

  • ancestry_analysis: use genetic PCA loadings to compare samples to population reference panels, and report PGS according to where they sit in empirical distributions (percentile/Z) and/or PGS adjusted for continuous axes of genetic ancestry (regressing PGS~PCs).
  • relabel_ids: a program to make a variant information file IDs match another variant information file (e.g. a reference panel)
  • check_samplesheet: a program for validating pgsc_calc samplesheets

Improvements

  • download_scorefiles refactored to prefer HTTPS and attempt FTP fallback (to minimise FTP busy errors)
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