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Probabilistic Models in Biology

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  1. scLVM scLVM Public

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

    HTML 103 46

  2. peer peer Public

    Forked from mz2/peer

    A factor analysis package

    C++ 89 38

  3. limix-backup limix-backup Public

    C++ 45 12

  4. pygp pygp Public

    A Gaussian process toolbox in python

    Python 41 9

  5. deepcpg deepcpg Public

    Forked from cangermueller/deepcpg

    Deep neural networks for predicting CpG methylation

    Python 32 11

  6. bicycle bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    Jupyter Notebook 27 1

Repositories

Showing 10 of 49 repositories
  • deeprvat Public
    PMBio/deeprvat’s past year of commit activity
    Python 15 1 3 1 Updated Jul 3, 2024
  • PMBio/deeprvat-analysis’s past year of commit activity
    Python 2 0 0 1 Updated Jun 21, 2024
  • bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    PMBio/bicycle’s past year of commit activity
    Jupyter Notebook 27 1 0 0 Updated Jun 6, 2024
  • MetH5Format Public

    HDF5-based container format for Methylation calls from long reads

    PMBio/MetH5Format’s past year of commit activity
    Python 5 MIT 2 3 0 Updated Jan 24, 2024
  • MuDataSeurat Public

    .h5mu files interface for Seurat

    PMBio/MuDataSeurat’s past year of commit activity
    R 21 8 4 1 Updated Nov 28, 2023
  • PMBio/ase_spermatogenesis’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 17, 2023
  • PMBio/MultiOmicsCourse’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Nov 10, 2023
  • spava Public
    PMBio/spava’s past year of commit activity
    Python 0 0 0 0 Updated Sep 28, 2023
  • mb-nanopore-2022 Public

    Analysis code for publication "Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signature"

    PMBio/mb-nanopore-2022’s past year of commit activity
    Python 6 GPL-3.0 0 1 0 Updated Sep 18, 2023
  • pycoMeth Public

    DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets

    PMBio/pycoMeth’s past year of commit activity
    Python 24 GPL-3.0 3 3 0 Updated Jul 3, 2023

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