Nanopore sequencing of medulloblastoma

Data analysis code

This repository contains the analysis code for the manuscript

Tobias Rausch, Rene Snajder, Adrien Leger, Milena Simovic, Mădălina Giurgiu, Laura Villacorta, Anton G. Henssen, Stefan Fröhling, Oliver Stegle, Ewan Birney, Marc Jan Bonder, Aurelie Ernst, Jan O. Korbel
Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures
Cell Genomics, 2023, 100281, DOI: 10.1016/j.xgen.2023.100281

Project structure

• Genomics: Readme
• Epigenetics: Readme
• Transcriptomics: Readme

Data

Associated sequencing data have been deposited at the European Genome-phenome Archive under the accession number EGAS00001006576.