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@genomic-medicine-sweden

Genomic Medicine Sweden

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  1. tomte tomte Public

    Nextflow 10 3

  2. jasen jasen Public

    Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

    Nextflow 9 9

  3. gms-artic gms-artic Public

    Forked from connor-lab/ncov2019-artic-nf

    A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).

    Nextflow 8 6

  4. pgx pgx Public

    Pharmacogenomics pipeline

    HTML 8 2

  5. nallo nallo Public

    Nextflow 8 3

  6. gms_16S gms_16S Public

    A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

    Groovy 5

Repositories

Showing 10 of 36 repositories
  • tomte Public
    genomic-medicine-sweden/tomte’s past year of commit activity
    Nextflow 10 MIT 3 6 1 Updated Jul 5, 2024
  • Twist_Solid Public

    Pipeline for Solid tumours

    genomic-medicine-sweden/Twist_Solid’s past year of commit activity
    Python 3 GPL-3.0 6 21 7 Updated Jul 5, 2024
  • poppy Public
    genomic-medicine-sweden/poppy’s past year of commit activity
    Python 3 GPL-3.0 2 3 3 Updated Jul 5, 2024
  • raredisease Public Forked from nf-core/raredisease

    Call and score variants from WGS/WES of rare disease patients.

    genomic-medicine-sweden/raredisease’s past year of commit activity
    Nextflow 1 MIT 36 0 0 Updated Jul 5, 2024
  • nallo Public
    genomic-medicine-sweden/nallo’s past year of commit activity
    Nextflow 8 MIT 3 78 3 Updated Jul 4, 2024
  • test-datasets Public Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

    genomic-medicine-sweden/test-datasets’s past year of commit activity
    0 MIT 326 0 0 Updated Jul 4, 2024
  • taxprofiler Public Forked from nf-core/taxprofiler

    Taxonomic profiling of shotgun metagenomic data

    genomic-medicine-sweden/taxprofiler’s past year of commit activity
    Nextflow 0 MIT 33 18 0 Updated Jul 3, 2024
  • pgx Public

    Pharmacogenomics pipeline

    genomic-medicine-sweden/pgx’s past year of commit activity
    HTML 8 GPL-3.0 2 4 1 Updated Jul 1, 2024
  • NGPIris Public

    NGPIris 👁 (intelligence and repository interface software) is a light-weight tool for interacting with a Boto3 backed Hitachi Content Platform

    genomic-medicine-sweden/NGPIris’s past year of commit activity
    Python 0 GPL-2.0 3 18 2 Updated Jun 27, 2024
  • modules Public Forked from nf-core/modules

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    genomic-medicine-sweden/modules’s past year of commit activity
    Nextflow 0 MIT 657 0 0 Updated Jun 26, 2024
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