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Try fixing mamba in CI, pt 5 #80

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Try fixing mamba in CI, pt 5

Try fixing mamba in CI, pt 5 #80

Triggered via push March 27, 2024 04:31
@lczechlczech
pushed b7b9ba8
master
Status Failure
Total duration 11m 0s
Artifacts 48

ci.yaml

on: push
Matrix: envs
Matrix: example
Matrix: test
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96 errors and 1 warning
test (ubuntu-latest, hafpipe-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bwaaln-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bwaaln-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-haplotypecaller-2, mamba)
Process completed with exit code 1.
test (ubuntu-20.04, base)
Process completed with exit code 2.
test (ubuntu-20.04, base)
Process completed with exit code 1.
example (ubuntu-20.04)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-freebayes-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-freebayes-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-bcftools-2, mamba)
Process completed with exit code 1.
test (ubuntu-22.04, base)
Process completed with exit code 1.
test (ubuntu-22.04, base)
Process completed with exit code 2.
envs (ubuntu-22.04, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-bcftools-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-bcftools-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, duplicates-dedup-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-adapterremoval-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, base, mamba)
Process completed with exit code 1.
test (ubuntu-latest, base, mamba)
Process completed with exit code 2.
envs (ubuntu-20.04, mamba)
Process completed with exit code 1.
test (ubuntu-latest, hafpipe-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, hafpipe-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, hafpipe-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, hafpipe-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-freebayes-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-freebayes-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-bcftools-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-4, mamba)
Process completed with exit code 2.
test (ubuntu-latest, hafpipe-4, mamba)
Process completed with exit code 2.
test (ubuntu-latest, hafpipe-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bwa-mem-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-adapterremoval-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-cutadapt-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-haplotypecaller-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, pileup-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, pileup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bowtie2-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bowtie2-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-bcftools-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwa-mem2-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, calling-haplotypecaller-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, calling-haplotypecaller-1, mamba)
Process completed with exit code 2.
example (ubuntu-22.04)
Process completed with exit code 1.
test (ubuntu-latest, duplicates-dedup-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, duplicates-dedup-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bwaaln-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-fastp-3, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-3, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-fastp-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-fastp-2, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-fastp-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-seqprep-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-seqprep-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-4, mamba)
Process completed with exit code 1.
test (ubuntu-latest, mapping-bwaaln-4, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-skewer-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-cutadapt-1, mamba)
Process completed with exit code 1.
test (ubuntu-latest, trimming-skewer-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, trimming-cutadapt-1, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bowtie2-2, mamba)
Process completed with exit code 2.
test (ubuntu-latest, mapping-bowtie2-2, mamba)
Process completed with exit code 1.
example (macos-12)
Process completed with exit code 1.
envs (macos-11, mamba)
Process completed with exit code 1.
envs (macos-12, mamba)
Process completed with exit code 1.
example (macos-11)
Process completed with exit code 1.
test (macos-12, base)
Process completed with exit code 1.
test (macos-12, base)
Process completed with exit code 1.
test (macos-11, base)
Process completed with exit code 1.
test (macos-11, base)
Process completed with exit code 1.
envs (macos-12, mamba)
df: getattrlist failed: Input/output error

Artifacts

Produced during runtime
Name Size
logs-example-macos-11 Expired
2.39 KB
logs-example-macos-12 Expired
2.24 KB
logs-example-ubuntu-20.04 Expired
2.17 KB
logs-example-ubuntu-22.04 Expired
2.16 KB
logs-test-macos-11-base Expired
283 Bytes
logs-test-macos-12-base Expired
283 Bytes
logs-test-ubuntu-20.04-base Expired
291 Bytes
logs-test-ubuntu-22.04-base Expired
291 Bytes
logs-test-ubuntu-latest-base Expired
291 Bytes
logs-test-ubuntu-latest-calling-bcftools-1 Expired
328 Bytes
logs-test-ubuntu-latest-calling-bcftools-2 Expired
328 Bytes
logs-test-ubuntu-latest-calling-bcftools-3 Expired
328 Bytes
logs-test-ubuntu-latest-calling-bcftools-4 Expired
328 Bytes
logs-test-ubuntu-latest-calling-freebayes-1 Expired
332 Bytes
logs-test-ubuntu-latest-calling-freebayes-2 Expired
332 Bytes
logs-test-ubuntu-latest-calling-freebayes-3 Expired
332 Bytes
logs-test-ubuntu-latest-calling-haplotypecaller-1 Expired
347 Bytes
logs-test-ubuntu-latest-calling-haplotypecaller-2 Expired
347 Bytes
logs-test-ubuntu-latest-calling-haplotypecaller-3 Expired
347 Bytes
logs-test-ubuntu-latest-calling-haplotypecaller-4 Expired
347 Bytes
logs-test-ubuntu-latest-duplicates-dedup-1 Expired
328 Bytes
logs-test-ubuntu-latest-duplicates-dedup-2 Expired
328 Bytes
logs-test-ubuntu-latest-hafpipe-1 Expired
306 Bytes
logs-test-ubuntu-latest-hafpipe-2 Expired
306 Bytes
logs-test-ubuntu-latest-hafpipe-3 Expired
306 Bytes
logs-test-ubuntu-latest-hafpipe-4 Expired
306 Bytes
logs-test-ubuntu-latest-mapping-bowtie2-1 Expired
327 Bytes
logs-test-ubuntu-latest-mapping-bowtie2-2 Expired
327 Bytes
logs-test-ubuntu-latest-mapping-bwa-mem-1 Expired
327 Bytes
logs-test-ubuntu-latest-mapping-bwa-mem2-1 Expired
329 Bytes
logs-test-ubuntu-latest-mapping-bwa-mem2-2 Expired
329 Bytes
logs-test-ubuntu-latest-mapping-bwaaln-1 Expired
324 Bytes
logs-test-ubuntu-latest-mapping-bwaaln-2 Expired
324 Bytes
logs-test-ubuntu-latest-mapping-bwaaln-3 Expired
324 Bytes
logs-test-ubuntu-latest-mapping-bwaaln-4 Expired
324 Bytes
logs-test-ubuntu-latest-pileup-1 Expired
301 Bytes
logs-test-ubuntu-latest-trimming-adapterremoval-1 Expired
346 Bytes
logs-test-ubuntu-latest-trimming-adapterremoval-2 Expired
346 Bytes
logs-test-ubuntu-latest-trimming-adapterremoval-3 Expired
347 Bytes
logs-test-ubuntu-latest-trimming-cutadapt-1 Expired
331 Bytes
logs-test-ubuntu-latest-trimming-cutadapt-2 Expired
331 Bytes
logs-test-ubuntu-latest-trimming-fastp-1 Expired
323 Bytes
logs-test-ubuntu-latest-trimming-fastp-2 Expired
323 Bytes
logs-test-ubuntu-latest-trimming-fastp-3 Expired
323 Bytes
logs-test-ubuntu-latest-trimming-seqprep-1 Expired
329 Bytes
logs-test-ubuntu-latest-trimming-seqprep-2 Expired
329 Bytes
logs-test-ubuntu-latest-trimming-skewer-1 Expired
326 Bytes
logs-test-ubuntu-latest-trimming-skewer-2 Expired
325 Bytes