Merge pull request #102 from hyphaltip/fix_bug101_qCount0

fix for bug #101 where qCount is None not 0
nextgenusfs · Nov 6, 2023 · e1c701a · e1c701a
2 parents 1eb9631 + 7afb042
commit e1c701a
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/amptk/amptklib.py b/amptk/amptklib.py
@@ -1446,6 +1446,8 @@ def validateorientation(tmp, reads, otus, output):
             cols = line.split('\t')
             if cols[2] == '-':
                 qCount = OTUCounts.get(cols[0])
+                if qCount is None:
+                    qCount = 0
                 tCount = OTUCounts.get(cols[1])
                 if qCount > tCount:
                     if not cols[1] in orient_remove and not cols[1] in keeper: