FAVITES v1.2.11

• Fixed bug when dealing with true 0-length branches in the time tree (e.g. from TimeSample_Infection)
• Updated link to MSMS source code

FAVITES 1.2.10

• Updated CCMnet_py to Version_0.2_6_8_22

FAVITES 1.2.9

• Added CCMnet_py as ContactNetworkGenerator_CCMnetPy

FAVITES 1.2.8

• Fixed bug that disallowed using NodeEvolution_None with SequenceEvolution modules (thanks, Andres Colubri and Gabi Gionet!)

FAVITES 1.2.7

• Fixed Perl installation in Docker image (e.g. for use with Sequencing_Grinder)

FAVITES 1.2.6

• Fixed bug in NodeEvolution modules when all individuals recover

FAVITES 1.2.5

• Added ability to read sample times from file via the TimeSample_File and NumTimeSample_File
• Fixed bug in SequenceEvolution_NoMutation

FAVITES 1.2.4

• Fix N0 parameter check in NodeEvolution_VirusTreeSimulator to allow for any positive number (rather than only positive integers)

FAVITES 1.2.3

• In SAAPPHIIRE and SAPHIRE models, added E to infectors (and thus seeds)

FAVITES 1.2.2

• Removed TimeSample_SAAPPHIIREFirstExposed (it doesn't make sense in terms of simulation; sample times = infection times)
• Added NodeEvolution_TransmissionTree and TimeSample_Infection to achieve the same effect

NEED TO UPDATE FAVITES WIKI. WILL UPDATE THESE LINKS TO POINT TO WIKI ONCE DONE