Reference-based consensus creation
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Updated
Jul 2, 2024 - Nextflow
Reference-based consensus creation
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
Versatile open-source tool for microbiome analysis
Assembly and intrahost/low-frequency variant calling for viral samples
In-silico PCR, primer design and padlock design for in-situ sequencing
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
Accurate sample inference from amplicon data with single nucleotide resolution
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
R functions and workflow for submitting amplicon sequence data to the ENA.
A long-read analysis toolbox for cancer and population genomics
A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
In-silico PCR amplification on complete genomes
Sequence Read Archive Classification
A tool for Nanopore Amplicon Real-Time (NART) analysis.
A pipeline to analyse marine fish amplicon data
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