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Keep conda from constricting your brew installs
Now that you have conda
in combination with brew
you will get the below message if you run brew doctor
.
brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!
Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and which additional flags to use when
compiling and linking.
Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew-provided
script of the same name. We found the following "config" scripts:
/Users/username/anaconda3/bin/icu-config
/Users/username/anaconda3/bin/krb5-config
/Users/username/anaconda3/bin/freetype-config
/Users/username/anaconda3/bin/xslt-config
/Users/username/anaconda3/bin/libpng16-config
/Users/username/anaconda3/bin/python3.7-config
/Users/username/anaconda3/bin/libpng-config
/Users/username/anaconda3/bin/xml2-config
/Users/username/anaconda3/bin/python3.7m-config
/Users/username/anaconda3/bin/python3-config
/Users/username/anaconda3/bin/curl-config
/Users/username/anaconda3/bin/ncursesw6-config
/Users/username/anaconda3/bin/pcre-config
This could be a problem, or just a nuissance. You can change this.
You can add the lines below to your .bashrc
file.
open -a BBEdit ~/.bashrc
(Or use another text-editor).
export SANS_ANACONDA="/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin"
# added by Anaconda3 4.4.0 installer
export PATH="/Users/username/anaconda3/bin:$SANS_ANACONDA"
alias perseus="export PATH="\$SANS_ANACONDA" && echo Medusa decapitated."
alias medusa="export PATH="/Users/username/anaconda3/bin:\$SANS_ANACONDA" && echo Perseus defeated."
brew () {
perseus
command brew "$@"
medusa
}
Licence. The MIT License (MIT): http://opensource.org/licenses/MIT.
Copyright (c) 2014-2023, Bas G.L. Nelissen & Sander W. van der Laan, UMC Utrecht, Utrecht, the Netherlands.
Introduction
General instructions
slide2Tiles
slideAppend.sh
slideAppendGCT.sh
slideConvert
slideDirectory
slideDupIdentify.py
slideEMask
slideEntropySegmentation.py
slideExtract.py
slideExtractTiles.py
slideInfo
slideInfo.py
slideJobChecker
slideLookup
slideMacro
slideMacro.py
slideMask
slideNormalize
slideRename
slideRename.py
slideThumb
slideThumb.py
slideQuantify_v1
slideQuantify_v1_1_expresshist_mask.sh
slideQuantify_v1_2_expresshist_tile.sh
slideQuantify_v1_3_tile_normalizing.sh
slideQuantify_v1_4_cellprofiler.sh
slideQuantify_v1_5_wrapup.sh
slideQuantify_v2
slideQuantify_v2_1_entropy_segmentation.sh
slideQuantify_v2_2_extract_tiles.sh
slideQuantify_v2_3_tile_normalizing.sh
slideQuantify_v2_4_cellprofiler.sh
slideQuantify_v2_5_wrapup.sh
slideQuantifyOSX
slideQuantify_cellprofiler.sh
slideQuantify_mask.sh
slideQuantify_normalizing.sh
slideQuantify_tiling.sh
slideQuantify_wrapup.sh
Conda version (default/preferred)
Homebrew version
Rocky 8 Conda version (default/preferred)
Ubuntu 16.04 LTS
Ubuntu 12.04
CentOS7 Conda version with modules
Administrator version